Our Guides for the software we use
This Will Get you Started With Scaffold 4.0
Our Older Guide for Scaffold 3.0. Still contains some useful info
Our First Timer Guides
New To the Facility Check here
Nice recent intro to mass spec & Proteomics on Twitter no less!
Tutorials From ProteomeSoftware.com
ProteomeSoftware.com:
Makers of Scaffold
Manual Verification of Peptide Identifications
Scaffold Questions and Assumptions
Please read if you are new to Scaffold
Tutorials From Ion Source
Ionsource.com
Protein Identification Tutorial
De Novo Peptide Sequencing Tutorial
Interpreting Electrospray mass Spectra
Molecular and Cellular Proteomics Tutorials
Molecular and Cellular Proteomics
De novo sequencing and homology searching (ppt)
Fourier transform mass spectrometry (ppt)
Principles of electrospray ionization (ppt)
Tutorial Presentations Presentations From Duke
Duke Proteomics Core Facility
Proteomics Tutorial Presentations
Tutorial Presentations Presentations From OHSU
OHSU Proteomics Core Facility Site
OHSU Proteomics Shared Resouce
Challenges for proteomics core facilities
Other Nice Tutorials and Great Information
Tandem Mass Spectrometry from Wikipedia
The Whys and Wherefores of Quadrupole Ion Trap Mass Spectrometry
Introduction to Computational Proteomics (PLOS Computational Biology)
Introduction To Proteomics Seminar (Michael MacCoss University of Washington)
