| Recent Publications from the Facility |
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Untitled Document
Publications:
Collaborations
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Fenyo D, Phinney BS, Beavis RC.
Determining the overall merit of protein identification data sets:
rho-diagrams and rho-scores.
J Proteome Res.
2007 May;6(5):1997-2004. Epub 2007 Mar 31.
PMID: 17397212 [PubMed - in process]
- Eigenheer
RA, Jin Lee Y, Blumwald E, Phinney BS, Gelli A.
Extracellular glycosylphosphatidylinositol-anchored mannoproteins and
proteases of Cryptococcus neoformans.
FEMS Yeast Res.
2007 Jun;7(4):499-510. Epub 2007 Jan 19.
PMID: 17233760 [PubMed - in process]
- Katz
E, Fon M, Lee YJ, Phinney BS, Sadka A, Blumwald E.
The citrus fruit proteome: insights into citrus fruit metabolism.
Planta.
2007 May 31; [Epub ahead of print]
PMID: 17541628 [PubMed - as supplied by publisher]
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Lin MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka KI, Miura E,
Xoconostle-Cazares B, Gendler K, Jorgensen RA, Phinney B, Lough TJ,
Lucas WJ.
FLOWERING LOCUS T Protein May Act as the Long-Distance Florigenic
Signal in the Cucurbits.
Plant Cell.
2007 May 31; [Epub ahead of print]
PMID: 17540715 [PubMed - as supplied by publisher]
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Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS,
Weintraub ST, Witkowska HE, Yates NA.
ABRF-PRG2006 study: Relative protein qQuantitation.
Mol Cell Proteomics.
2007 May 18; [Epub ahead of print]
PMID: 17513294 [PubMed - as supplied by publisher]
- Werner
JA, Kasten RW, Feng S, Sykes JE, Hodzic E, Salemi MR, Barthold SW,
Chomel BB.
Experimental infection of domestic cats with passaged genotype I
Bartonella henselae.
Vet Microbiol.
2007 Jun 21;122(3-4):290-7. Epub 2007 Jan 31.
PMID: 17321078 [PubMed - in process]
- Lee
YJ, Rice RH, Lee YM.
Proteome analysis of human hair shaft: from protein identification to
posttranslational modification.
Mol Cell Proteomics.
2006 May;5(5):789-800. Epub 2006 Jan 30.
PMID: 16446289 [PubMed - indexed for MEDLINE]
- Lee YJ, Lackner LL, Nunnari JM, Phinney BS.
Shotgun cross-linking analysis for
studying quaternary and tertiary protein structures.
J Proteome Res.
2007 Oct; 6( 10): 3908-17.
Epub 2007 Sep 14.
PMID: 17854217 [PubMed - indexed for
MEDLINE]
- Lin
MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka K, Miura E,
Xoconostle-Cázares B, Gendler K, Jorgensen RA, Phinney B,
Lough TJ,
Lucas WJ.
FLOWERING LOCUS T protein may act
as the long-distance florigenic signal in the cucurbits.
Plant
Cell. 2007 May; 19( 5): 1488-506. Epub 2007 May 31.
PMID: 17540715 [PubMed - indexed for
MEDLINE]
Publications
whose Proteomics Data was generated in the Proteomics Core Facility:
- Park
KS, Mohapatra DP, Misonou H, Trimmer JS.
Graded regulation of the Kv2.1 potassium channel by variable
phosphorylation.
Science.
2006 Aug 18;313(5789):976-9.
PMID: 16917065 [PubMed - indexed for MEDLINE]
- Damoc
E, Fraser CS, Zhou M, Videler H, Mayeur GL, Hershey JW, Doudna JA,
Robinson CV, Leary JA.
Structural characterization of the human eukaryotic initiation factor 3
protein complex by mass spectrometry.
Mol Cell Proteomics.
2007 Feb 23; [Epub ahead of print]
PMID: 17322308 [PubMed - as supplied by publisher]
- Takanishi CL, Ma LH, Wood MJ.
A genetically encoded probe for
cysteine sulfenic Acid protein modification in vivo.
Biochemistry..
2007 Dec 18;46(50):14725-32.
Epub 2007 Nov 20.
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UC Davis
Proteomics Core Sample prep and Data Analysis
Classes
- All
Classes are limited to 5 people and will be
rescheduled if less than 2 people sign up
- Please
Call the Laboratory to sign up
(530-754-9474)
- Classes
are open to everyone on campus
and off campus
- Classes
are free
Classes
Data Analysis I
- This class covers basic data
interpretation of small to large datasets using the software Scaffold,
x!tandem and Mascot
- Offered the first Tuesday of the
Month @ 2 pm room 1414 GBSF
- Instructor = Brett S. Phinney Ph D.
- Length = 1.5 hours
Data
Analysis II
- This Class
covers advanced MS/MS interpretation including manual confirmation and
de novo sequencing
- Offered the
Second Tuesday of the Month
- Instructor
= Young-Jin lee , Ph D. and Michelle Salemi
- For time
and room info Please call and sign up
Sample Prep
I (ingel Digestion)
- This Class
covers the technique of digestion gel bands for subsequent Mass spec
analysis.
- Do this
yourself and save some money!
- Offered the
Forth Tuesday of the Month
- Instructor
= Michelle Salemi
- For time
and room information Please call
Sample
Prep II (Pre-fractionation, Enrichment and Gel C MS/MS)
Temporally suspended
until we get our HPLC fixed
- This Class
covers the concepts of sample fractionation (Mudpit) and sample
enrichment certain PTM’s like Phosphopeptides
- Offered the
Third Tuesday of the Month
- Instructor
= Rich Eigenheer, Ph D.
- For time
and room info Please call and sign up
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