Publications:

Collaborations

• Fenyo D, Phinney BS, Beavis RC.
  Determining the overall merit of protein identification data sets: rho-diagrams and rho-scores.
  J Proteome Res. 2007 May;6(5):1997-2004. Epub 2007 Mar 31.
  PMID: 17397212 [PubMed - in process]
  
  
• Eigenheer RA, Jin Lee Y, Blumwald E, Phinney BS, Gelli A.
  Extracellular glycosylphosphatidylinositol-anchored mannoproteins and proteases of Cryptococcus neoformans.
  FEMS Yeast Res. 2007 Jun;7(4):499-510. Epub 2007 Jan 19.
  PMID: 17233760 [PubMed - in process]
  
  
• Katz E, Fon M, Lee YJ, Phinney BS, Sadka A, Blumwald E.
  The citrus fruit proteome: insights into citrus fruit metabolism.
  Planta. 2007 May 31; [Epub ahead of print]
  PMID: 17541628 [PubMed - as supplied by publisher]
  
  
• Lin MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka KI, Miura E, Xoconostle-Cazares B, Gendler K, Jorgensen RA, Phinney B, Lough TJ, Lucas WJ.
  FLOWERING LOCUS T Protein May Act as the Long-Distance Florigenic Signal in the Cucurbits.
  Plant Cell. 2007 May 31; [Epub ahead of print]
  PMID: 17540715 [PubMed - as supplied by publisher]
  
  
• Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS, Weintraub ST, Witkowska HE, Yates NA.
  ABRF-PRG2006 study: Relative protein qQuantitation.
  Mol Cell Proteomics. 2007 May 18; [Epub ahead of print]
  PMID: 17513294 [PubMed - as supplied by publisher]
  
  
• Werner JA, Kasten RW, Feng S, Sykes JE, Hodzic E, Salemi MR, Barthold SW, Chomel BB.
  Experimental infection of domestic cats with passaged genotype I Bartonella henselae.
  Vet Microbiol. 2007 Jun 21;122(3-4):290-7. Epub 2007 Jan 31.
  PMID: 17321078 [PubMed - in process]
  
  
• Lee YJ, Rice RH, Lee YM.
  Proteome analysis of human hair shaft: from protein identification to posttranslational modification.
  Mol Cell Proteomics. 2006 May;5(5):789-800. Epub 2006 Jan 30.
  PMID: 16446289 [PubMed - indexed for MEDLINE]

• Lee YJ, Lackner LL, Nunnari JM, Phinney BS.
  
  Shotgun cross-linking analysis for studying quaternary and tertiary protein structures.

  J Proteome Res. 2007 Oct;6(10):3908-17. Epub 2007 Sep 14.

  PMID: 17854217 [PubMed - indexed for MEDLINE]

• Lin MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka K, Miura E, Xoconostle-Cázares B, Gendler K, Jorgensen RA, Phinney B, Lough TJ, Lucas WJ.
  
  FLOWERING LOCUS T protein may act as the long-distance florigenic signal in the cucurbits.

  Plant Cell. 2007 May;19(5):1488-506. Epub 2007 May 31.

  PMID: 17540715 [PubMed - indexed for MEDLINE]

Publications whose Proteomics Data was generated in the Proteomics Core Facility:

• Park KS, Mohapatra DP, Misonou H, Trimmer JS.
  Graded regulation of the Kv2.1 potassium channel by variable phosphorylation.
  Science. 2006 Aug 18;313(5789):976-9.
  PMID: 16917065 [PubMed - indexed for MEDLINE]
  
  
• Damoc E, Fraser CS, Zhou M, Videler H, Mayeur GL, Hershey JW, Doudna JA, Robinson CV, Leary JA.
  Structural characterization of the human eukaryotic initiation factor 3 protein complex by mass spectrometry.
  Mol Cell Proteomics. 2007 Feb 23; [Epub ahead of print]
  PMID: 17322308 [PubMed - as supplied by publisher]


• Takanishi CL, Ma LH, Wood MJ.
  
  A genetically encoded probe for cysteine sulfenic Acid protein modification in vivo.

  Biochemistry.. 2007 Dec 18;46(50):14725-32. Epub 2007 Nov 20.

Posters:

ASMS 2008

Label-Free Relative Quantitation of Developmentally Expressed Soluble and Membrane Proteins in the R

ABRF2008

1D, 2D and 3D Peptide LC MS/MS Analysis of Low Abundance Proteins in Complex Proteomes

ABRF2007

PRG 2007: Advanced Quantitative Proteomics

Facility Posters

Quantitation at the Proteomics Core Facility

Proteomics Core Facility  

Older Posters (including ABRF PRG and MSF)

c1 Fragment Ions in Collision-induced Dissociation of Glutamine Containing

Cross-linking Site Mapping of Sindbis Virus Structural Proteins

Human Hair Proteomics: Analysis of Human Hair Protein Composition by Mudpit

Mass Spectrometric Characterization of Phosphorylation Sites

Toward Diagnostic Proteomics using Mudpit Technology:

PRG 2006: Relative Protein Quantification