Collaborations:

A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity.

Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald PC.

Science. 2009 Nov 6;326(5954):850-3.

Non-cultivated Plant Foods in West Africa: Nutritional Analysis of the Leaves of Three Indigenous Leafy Vegetables in Ghana (pp 39-42)

Robert S. Glew (USA), Boakye Amoako-Atta, Gloria Ankar-Brewoo (Ghana), Jack Presley (USA), Lu-Te Chuang (Taiwan), Mark Millson, Barrett R. Smith, Robert H. Glew (USA)

Reanalysis of Tyrannosaurus rex Mass Spectra

Marshall Bern, Brett S. Phinney and David Goldberg

Articles ASAP (As Soon As Publishable)

Publication Date (Web): July 15, 2009 (Article)

In vivo multiplex quantitative analysis of 3 forms of alpha melanocyte stimulating hormone in pituitary of prolyl endopeptidase deficient mice.

Bertrand Perroud , Rudy J Alvarado , Glenda M Espinal , Alex R Morado , Brett S Phinney and Craig H Warden

Founder Mutations in the Lipase H Gene in Families with Autosomal Recessive Woolly Hair/Hypotrichosis.

Shimomura Y, Wajid M, Zlotogorski A, Lee YJ, Rice RH, Christiano AM.J Invest Dermatol. 2009 Mar 5. [Epub ahead of print]PMID: 19262606 [PubMed - as supplied by publisher]Related Articles

Polygalacturonase Causes Lygus-like Damage on Plants: Cloning and Identification of Western Tarnished Plant Bug (Lygus hesperus) Polygalacturonases Secreted During Feeding - (Peer Reviewed Journal)

Celorio-Mancera, M., Allen, M.L., Powell, A.L., Ahmadi, H., Salemi, M.R., Phinney, B.S., Shackel, K.A., Greve, L., Teuber, L.R., Labavitch, J.M. 2008. Polygalacturonase Causes Lygus-like Damage on Plants: Cloning and Identification of WesternPlant Bug (Lygus hesperus) Polygalacturonases Secreted During Feeding. Arthropod-Plant Interactions. 2:215-225.

Distinguishing Mouse Strains by Proteomic Analysis of Pelage Hair.Rice RH, Rocke DM, Tsai HS, Silva KA, Lee YJ, Sundberg JP.J Invest Dermatol. 2009 Mar 19. [Epub ahead of print]PMID: 19295613 [PubMed - as supplied by publisher]

ABRF-PRG05: De Novo Peptide Sequence Determination.

Falick AM, Kowalak JA, Lane WS, Phinney BS, Turck CW, Weintraub ST, West KA, Neubert TA.J Biomol Tech. 2008 Sep;19(4):251-6. PMID: 19137115 [PubMed - in process]

Analysis of the pumpkin phloem proteome provides insights into angiosperm sieve tube function.Lin MK, Lee YJ, Lough TJ, Phinney BS, Lucas WJ.Mol Cell Proteomics. 2009 Feb;8(2):343-56. Epub 2008 Oct 20.PMID: 18936055 [PubMed - indexed for MEDLINE] Related Articles

Fenyo D, Phinney BS, Beavis RC.
Determining the overall merit of protein identification data sets: rho-diagrams and rho-scores.
J Proteome Res. 2007 May;6(5):1997-2004. Epub 2007 Mar 31.
PMID: 17397212 [PubMed - in process]

Eigenheer RA, Jin Lee Y, Blumwald E, Phinney BS, Gelli A.
Extracellular glycosylphosphatidylinositol-anchored mannoproteins and proteases of Cryptococcus neoformans.
FEMS Yeast Res. 2007 Jun;7(4):499-510. Epub 2007 Jan 19. Save
PMID: 17233760 [PubMed - in process]

Katz E, Fon M, Lee YJ, Phinney BS, Sadka A, Blumwald E.
The citrus fruit proteome: insights into citrus fruit metabolism.
Planta. 2007 May 31; [Epub ahead of print]
PMID: 17541628 [PubMed - as supplied by publisher]

Lin MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka KI, Miura E, Xoconostle-Cazares B, Gendler K, Jorgensen RA, Phinney B, Lough TJ, Lucas WJ.
FLOWERING LOCUS T Protein May Act as the Long-Distance Florigenic Signal in the Cucurbits.
Plant Cell. 2007 May 31; [Epub ahead of print]
PMID: 17540715 [PubMed - as supplied by publisher]

Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS, Weintraub ST, Witkowska HE, Yates NA.
ABRF-PRG2006 study: Relative protein qQuantitation.
Mol Cell Proteomics. 2007 May 18; [Epub ahead of print]
PMID: 17513294 [PubMed - as supplied by publisher]

Werner JA, Kasten RW, Feng S, Sykes JE, Hodzic E, Salemi MR, Barthold SW, Chomel BB.
Experimental infection of domestic cats with passaged genotype I Bartonella henselae.
Vet Microbiol. 2007 Jun 21;122(3-4):290-7. Epub 2007 Jan 31.
PMID: 17321078 [PubMed - in process]

Lee YJ, Rice RH, Lee YM.
Proteome analysis of human hair shaft: from protein identification to posttranslational modification.
Mol Cell Proteomics. 2006 May;5(5):789-800. Epub 2006 Jan 30.
PMID: 16446289 [PubMed - indexed for MEDLINE]

Lee YJ, Lackner LL, Nunnari JM, Phinney BS.Shotgun cross-linking analysis for studying quaternary and tertiary protein structures.J Proteome Res. 2007 Oct;6(10):3908-17. Epub 2007 Sep 14. PMID: 17854217 [PubMed - indexed for MEDLINE]

Lin MK, Belanger H, Lee YJ, Varkonyi-Gasic E, Taoka K, Miura E, Xoconostle-Cázares B, Gendler K, Jorgensen RA, Phinney B, Lough TJ, Lucas WJ.FLOWERING LOCUS T protein may act as the long-distance florigenic signal in the cucurbits.Plant Cell. 2007 May;19(5):1488-506. Epub 2007 May 31. PMID: 17540715 [PubMed - indexed for MEDLINE]

Publications whose Proteomics Data was generated in the Proteomics Core Facility:

RIN4 Functions with Plasma Membrane H⁺-ATPases to Regulate Stomatal Apertures during Pathogen Attack

Liu J, Elmore JM, Fuglsang AT, Palmgren MG, Staskawicz BJ, et al. 2009 RIN4 Functions with Plasma Membrane H⁺-ATPases to Regulate Stomatal Apertures during Pathogen Attack. PLoS Biol 7(6): e1000139. doi:10.1371/journal.pbio.1000139

A kinase-START gene confers temperature-dependent resistance to wheat stripe rust.Fu D, Uauy C, Distelfeld A, Blechl A, Epstein L, Chen X, Sela H, Fahima T, Dubcovsky J.Science. 2009 Mar 6;323(5919):1357-60. Epub 2009 Feb 19.PMID: 19228999 [PubMed - indexed for MEDLINE]

Grade-dependent proteomic characterization of kidney cancer.

Perroud B, Ishimaru T, Borowsky AD, Weiss RH. Mol Cell Proteomics. 2009 Jan 21. [Epub ahead of print]PMID: 19164279 [PubMed - as supplied by publisher]

Metabolic pathways in Anopheles stephensi mitochondria.

Giulivi C, Ross-Inta C, Horton AA, Luckhart S. Biochem J. 2008 Oct 15;415(2):309-16.

PMID: 18588503 [PubMed - indexed for MEDLINE]

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.

Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, Lapidus A, Rokhsar DS, Lebrilla CB, German JB, Price NP, Richardson PM, Mills DA. Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18964-9. Epub 2008 Nov 24.PMID: 19033196 [PubMed - indexed for MEDLINE]

Identification of phosphorylation-induced changes in vimentin intermediate filaments by site-directed spin labeling and electron paramagnetic resonance.Pittenger JT, Hess JF, Budamagunta MS, Voss JC, Fitzgerald PG.Biochemistry. 2008 Oct 14;47(41):10863-70. Epub 2008 Sep 20.PMID: 18803396 [PubMed - indexed for MEDLINE]

Reciprocal phosphorylation and glycosylation recognition motifs control NCAPP1 interaction with pumpkin phloem proteins and their cell-to-cell movement.

Taoka K, Ham BK, Xoconostle-Cázares B, Rojas MR, Lucas WJ. Plant Cell. 2007 Jun;19(6):1866-84. Epub 2007 Jun 29.PMID: 17601822 [PubMed - indexed for MEDLINE]

Damoc E, Fraser CS, Zhou M, Videler H, Mayeur GL, Hershey JW, Doudna JA, Robinson CV, Leary JA.
Structural characterization of the human eukaryotic initiation factor 3 protein complex by mass spectrometry.
Mol Cell Proteomics. 2007 Feb 23; [Epub ahead of print]
PMID: 17322308 [PubMed - as supplied by publisher]

Takanishi CL, Ma LH, Wood MJ.A genetically encoded probe for cysteine sulfenic Acid protein modification in vivo.Biochemistry.. 2007 Dec 18;46(50):14725-32. Epub 2007 Nov 20.

Park KS, Mohapatra DP, Misonou H, Trimmer JS.
Graded regulation of the Kv2.1 potassium channel by variable phosphorylation.
Science. 2006 Aug 18;313(5789):976-9.
PMID: 16917065 [PubMed - indexed for MEDLINE]